bioinfo:oneliners
Ceci est une ancienne révision du document !
for filename in *.fa; do sed -i '/>Recurrent fasta name/c\>'$filename'' $filename; done
all VCF to vcf.gz
ls *.vcf | xargs -n1 -P0 bgzip
AWK
awk '{if(NR%4==2) {count++; bases += length} } END{print bases/count}' <fastq_file> # keep online lines with col 5 & 4 of length == 1char zgrep -v "\.\/\.:\." Merged.vcf.gz | awk '{if (length($5)==1 && length($4)==1) print $line}'
bioinfo/oneliners.1634564159.txt.gz · Dernière modification : 2021/10/18 15:35 de klorobionten