Différences

Ci-dessous, les différences entre deux révisions de la page.

--- bioinfo:oneliners [2021/03/30 13:07] – créée klorobionten
+++ bioinfo:oneliners [2023/09/12 23:15] (Version actuelle) – klorobionten
@@ Ligne 1: / Ligne 1: @@
+<code>
 for filename in *.fa; do sed -i '/>Recurrent fasta name/c\>'$filename'' $filename; done
+</code>
+====  all VCF to vcf.gz ====
+<code>
+ls *.vcf | xargs -n1 -P0 bgzip
+</code>
+===== AWK =====
+<code>
+awk '{if(NR%4==2) {count++; bases += length} } END{print bases/count}' <fastq_file>
+# keep online lines with col 5 & 4 of length == 1char
+zgrep -v "\.\/\.:\." Merged.vcf.gz | awk '{if (length($5)==1 && length($4)==1) print $line}'
+</code>
+Find last modified files from active directory.
+<code>
+find $1 -type f -exec stat --format '%Y :%y %n' "{}" \; | sort -nr | cut -d: -f2- | head
+</code>